As I stood in my kitchen, the aroma of freshly baked bread wafted through the air, instantly transporting me to the bustling streets of New York City. Nothing compares to the joy of pulling a batch of homemade Chocolate Chip Bagels from the oven, their shiny, golden crust glistening with sweet promise. This delightful recipe not only provides a fun twist on classic bagels—thanks to rich chocolate morsels—but also boasts an easy overnight prep method, making your morning routine a breeze. Perfect for breakfast, brunch, or a sweet snack, these bagels will have everyone asking for seconds. Intrigued? Let’s dive into the world of baking these delicious treats!

Why Are These Bagels So Special?
Homemade Goodness: Nothing beats the satisfaction of baking your own bagels right in your kitchen!
Chewy Perfection: Achieve the ideal New York-style texture with a simple overnight refrigeration process.
Decadent Sweetness: Loaded with melty chocolate morsels, these bagels will satisfy your sweet cravings.
Time-Saving Approach: Prep them at night and wake up to freshly baked delights without the morning rush!
Crowd-Pleaser: Serve them warm with cream cheese or butter, and watch family and friends come back for more—like with these delicious Butterscotch Chocolate Chip or Chocolate Chip Cookies!
Chocolate Chip Bagel Ingredients
For the Dough
- Lukewarm Water (2 cups plus 2 tablespoons) – Activates yeast; ensure the temperature is around 110°F (43°C) for best results.
- Molasses (1 tablespoon plus several for boiling) – Adds sweetness and color; you can substitute with honey or brown sugar if needed.
- Active Dry Yeast (2 teaspoons) – Leavens the dough; instant yeast can be swapped in equal amounts.
- Bread Flour (7 cups) – Provides structure and chewiness, contributing to that classic New York-style texture.
- Granulated Sugar (3 tablespoons) – Enhances sweetness and browning; brown sugar is a great alternative.
- Kosher Salt (2 teaspoons) – Balances flavors and strengthens the dough; use kosher or sea salt for the best taste.
For the Chocolate
- Mini Semisweet Chocolate Morsels (3/4 cup) – Infuses rich chocolate flavor; you can opt for milk or dark chocolate based on your preference.
For Boiling and Dusting
- Molasses (for boiling) – Adds extra flavor; ensure it’s mixed in boiling water for that perfect shine.
- Cornmeal (for dusting) – Prevents sticking when placing bagels on baking sheets; polenta or flour will work too!
These delectable chocolate chip bagels combine the joy of homemade baking with a sweet twist that everyone will love!
Step‑by‑Step Instructions for Chocolate Chip Bagels
Step 1: Prepare the Yeast Mixture
In a small bowl, combine 2 cups plus 2 tablespoons of lukewarm water (around 110°F), 1 tablespoon of molasses, and 2 teaspoons of active dry yeast. Stir gently until the yeast dissolves completely, then allow the mixture to sit for about 5 minutes until it becomes foamy. This step ensures your chocolate chip bagels will rise beautifully.
Step 2: Mix the Dough
In a stand mixer, combine 7 cups of bread flour, 3 tablespoons of granulated sugar, and 2 teaspoons of kosher salt. Slowly add the yeast mixture while mixing on low speed until a shaggy dough forms. Once combined, increase the speed to medium and knead for about 10 minutes, until the dough is smooth and elastic, creating the perfect base for your sweet bagels.
Step 3: Incorporate Chocolate Morsels
Gently fold in 3/4 cup of mini semisweet chocolate morsels into the smooth dough. Ensure even distribution by kneading briefly, but avoid overworking the dough. Once combined, transfer the dough into a lightly greased bowl, cover it with a clean kitchen towel or plastic wrap, and let it rise in a warm place for about 60-90 minutes, or until it doubles in size.
Step 4: Shape the Bagels
Punch down the risen dough to release any air bubbles and divide it into 4-ounce portions. Roll each piece into a ball, then use your fingers to create a hole in the center, gently stretching it to form a bagel shape. Place each formed bagel on a baking sheet dusted with cornmeal, ensuring they’re spaced out to allow for expansion.
Step 5: Overnight Proofing
Cover the shaped bagels with plastic wrap or a damp towel and refrigerate them for 12-18 hours. This overnight proofing process develops the flavors and ensures that your chocolate chip bagels attain that perfect chewy texture reminiscent of traditional New York-style bagels.
Step 6: Boil the Bagels
The day of baking, bring a large pot of water to a boil and stir in several tablespoons of molasses. Once boiling, carefully add the bagels in batches, boiling each side for 30 seconds until they puff up slightly. Remove them with a slotted spoon and place them on a wire rack to drain.
Step 7: Bake the Bagels
Preheat your oven to 450°F (232°C). Transfer the boiled bagels onto a preheated pizza stone or a baking sheet lined with parchment paper. Bake for 15-19 minutes, rotating halfway through, until they are golden brown and shiny. The aroma will fill your kitchen as you await the delightful transformation of your chocolate chip bagels!

Chocolate Chip Bagels Variations
Feel free to put your own spin on these delightful bagels—let your creativity shine through!
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Nuts: Add chopped walnuts or pecans for a crunchy texture and nutty flavor. The combination of chocolate and nuts is a timeless classic!
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Flavored Chocolate: Swap semisweet morsels for dark, milk, or even flavored chocolates like peppermint. A little twist on chocolate can open a world of flavor possibilities.
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Dried Fruits: Incorporate dried cherries or cranberries along with the chocolate for a fruity contrast that adds sweetness and chewiness.
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Spices: Sprinkle in some cinnamon or a hint of nutmeg for a warm, inviting flavor. These spices will elevate your bagels and make them feel extra cozy.
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Cream Cheese Spreads: Serve with flavored cream cheese, like chive or strawberry, to enhance the rich chocolate flavor. Complementing with the right spread can take your bagel experience to another level.
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Caramel Drizzle: Top with a drizzle of homemade caramel sauce right before serving for an indulgent treat. The sticky sweetness melds beautifully with chocolate!
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Sugar Topping: Dust the bagels with a sprinkle of cinnamon sugar before baking to add a sweet, crispy crust that perfectly contrasts the chewy interior.
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Vegan Option: Replace honey with agave syrup, and use a vegan butter alternative when spreading on your bagels. You can still enjoy these sweet delights with a little care for dietary preferences.
Whatever variation you choose, remember that the joy of cooking comes from making it your own. You might also enjoy trying these chocolatey treats with a side of White Chocolate Cupcakes or a slice of Chocolate Banana Bread!
Make Ahead Options
These homemade chocolate chip bagels are perfect for meal prep enthusiasts! You can shape them and refrigerate for up to 24 hours before baking, allowing you to enjoy freshly baked bagels with minimal morning effort. After shaping the bagels and placing them on a cornmeal-dusted baking sheet, simply cover them with plastic wrap and refrigerate for 12-18 hours to enhance flavor and texture. To maintain their quality, avoid overcrowding in the fridge and ensure they’re well-covered to prevent drying out. When you’re ready to bake your chocolate chip bagels, boil them and then bake as directed for delicious, warm treats just like fresh from your favorite bakery!
Storage Tips for Chocolate Chip Bagels
- Room Temperature: Keep your bagels in an airtight container for up to 4 days to maintain their freshness and chewy texture.
- Fridge: If stored in the fridge, consume them within 3 days to prevent them from becoming dry. Ensure they are tightly wrapped to avoid absorbing odors.
- Freezer: For longer storage, slice your chocolate chip bagels and freeze them in a freezer-safe bag for up to 6 months. This makes reheating quick and easy!
- Reheating: To reheat, simply toast or warm them in the oven at 350°F (175°C) for about 5-10 minutes until heated through, bringing back that delightful freshness.
What to Serve with Chocolate Chip Bagels?
Indulge in a delightful spread of flavors that perfectly complements your freshly baked bagels and turns them into a memorable meal.
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Creamy Cream Cheese: A classic pairing, smooth cream cheese adds a savory element that balances the sweetness of chocolate. Flavored varieties like chive or strawberry can elevate your experience even further.
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Fresh Fruit Salad: A vibrant mix of seasonal fruits offers a refreshing contrast to the rich chocolate. The natural sweetness and juices will enhance each bite of the bagel.
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Maple Syrup Drizzle: A light drizzle of maple syrup brings an added layer of sweetness that pairs beautifully and gives a lovely breakfast feel. It’s perfect for those who enjoy their bagels with a touch of sweetness.
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Crunchy Granola: Serving a side of crunchy granola provides a delightful texture contrast and nutty flavor that complements the soft, chewy bagels. Enjoy it on the side for a wholesome crunch!
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Coffee or Espresso: There’s nothing like a warm cup of coffee or a rich espresso to accompany your sweet bagels. The bitterness of coffee beautifully balances the sweetness of the chocolate chips.
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Cinnamon Sugar Dust: Dusting your bagels with cinnamon sugar post-baking transforms them into an even sweeter treat. Serve with butter for a delightful contrast—a perfect touch to brunch or snack time!
Enjoy your homemade chocolate chip bagels with these delicious accompaniments, creating a meal that’s both warm and inviting!
Expert Tips for Chocolate Chip Bagels
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Measure Carefully: Ensure you use precise measurements for each ingredient, especially flour, as too much can lead to a dense bagel.
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Water Temperature: Lukewarm water should be around 110°F (43°C) to properly activate yeast; too hot or too cold can affect rising.
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Knead Well: Knead the dough for the full 10 minutes to develop gluten, giving your chocolate chip bagels that perfect chewy texture.
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Avoid Overcrowding: When boiling, don’t crowd the bagels in the pot; this allows for even cooking and a nice puff.
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Cool Completely: Let the bagels cool on a wire rack after baking to maintain their crispy crust before serving or storing.

Chocolate Chip Bagels Recipe FAQs
What is the best way to select ripe ingredients for my bagels?
Absolutely! For the best chocolate chip bagels, choose fresh ingredients. Use bread flour that isn’t expired, and check that your yeast is active by ensuring it foams up in warm water. The water temperature should be around 110°F (43°C) for optimal activation.
How should I store my chocolate chip bagels to keep them fresh?
To keep your bagels at their best, store them in an airtight container at room temperature for up to 4 days. If you place them in the fridge, eat them within 3 days to prevent drying out. For longer storage, slice them beforehand and freeze them in a freezer-safe bag for up to 6 months.
Can I freeze chocolate chip bagels, and if so, how?
Yes, you can! To freeze your chocolate chip bagels, let them cool completely first. Then, slice each bagel to facilitate quick reheating later. Place the sliced bagels in a freezer-safe bag, pressing out as much air as possible, and freeze for up to 6 months. When ready to enjoy, simply toast or warm them at 350°F (175°C) for about 5-10 minutes.
What should I do if my bagels don’t rise as expected?
If your bagels don’t rise adequately, first check the freshness of your yeast—if it’s expired, replace it. During the rising phase, ensure the dough is kept in a warm, draft-free location. If you’re in a cooler environment, you can create a warm spot by placing the bowl in the oven with the light on, which helps to maintain warmth.
Are there any dietary considerations for these chocolate chip bagels?
Yes! For those with gluten sensitivities, consider using gluten-free bread flour alternatives, though the texture may vary. If you’re concerned about allergies, check for any chocolate morsels containing allergens like nuts or dairy, or opt for vegan chocolate to accommodate different dietary needs.
How can I tell when my chocolate chip bagels are done baking?
You’ll know your bagels are done when they have a shiny, golden-brown crust, typically achieved after 15-19 minutes in the oven at 450°F (232°C). Use a digital thermometer to ensure they are baked through; they should reach an internal temperature of about 200°F (93°C). Enjoy that delightful aroma as they cool!

Homemade Chocolate Chip Bagels: Sweet Morning Delight
Ingredients
Equipment
Method
- In a small bowl, combine 2 cups plus 2 tablespoons of lukewarm water, 1 tablespoon of molasses, and 2 teaspoons of active dry yeast. Stir gently and let sit for about 5 minutes.
- In a stand mixer, combine 7 cups of bread flour, 3 tablespoons of granulated sugar, and 2 teaspoons of kosher salt. Gradually add yeast mixture and knead for about 10 minutes.
- Gently fold in 3/4 cup of mini semisweet chocolate morsels and transfer dough to a greased bowl. Cover and allow to rise for 60-90 minutes.
- Punch down the dough and divide into 4-ounce portions. Roll each into a ball and create a hole in the center to form bagels.
- Cover bagels with plastic wrap and refrigerate for 12-18 hours.
- On baking day, boil water and add molasses. Boil bagels in batches for 30 seconds on each side. Remove and drain.
- Preheat oven to 450°F. Bake bagels for 15-19 minutes until golden brown.

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